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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015887906.1_cds_XP_016442399.1_37668
CDS Infomation

[gene=LOC107767817] [db_xref=GeneID:107767817] [protein=jacalin-related lectin 3-like isoform X2] [protein_id=XP_016442399.1] [location=complement(join(32926..33222,33298..33519,33939..34424,34508..34738,34822..35319,35432..35644,35745..35747))] [gbkey=CDS]
Sequence

ATGAGTTTAGAGAATCATGGAAAACAGATCATTTCAGTTGGGCCATGGGGAGGTGACAAT
GGATTGCACTGGGATGATGGAGTTTATTCCACCATAAGGCAACTGGAAATAGCTCATGGA
ACAGGAGTTGATTCTCTTAAGGTTGAATATGACAAAAATGGAACCTCAGTGTGGTCAGAG
AAGCATGGTGGCAGTGGAGGTGCTAAAACTGACAAGGTAAGACTTAATTATCCAGATGAG
TTTCTAACTTGTCTGCATGGATATTATGGTAGCTTACACGAAAGGGGGTCAGTTTTTGTG
CGATCACTTACATTCCAAAGCAATAAAAGAACATATGGACCATATGGTGTCCAGCAAGGA
ACATATTTCACTCTTCCAATTTCTAGAGGAAAAGTTGTTGGCTTCCATGGAAAATCTGGC
TGGTATCTTGATGCTATTGGAGTATACGTAGAGCCTATTCATAAATCTTTGCCGACTAAT
TCTCTAGTTCAATCTCAGCAACACCATTCTATCGTTCATTCCCAACAAAGTGTTGTCCAA
GGGTTTGAGAATTATGAATACTCAATGATACAAGGAAGTCTCGGTAAAAATTTTGATCTA
ATTGTTGCAGTTAGACACAAAGACGAGAACAGTAACATTTTACCTCCAACCACACTTTCA
AGACAAACTTCTGGTTCTGATCATGATTCCGGTTCAACTGGACCAAATAAAAAGGTGGCA
ACTATTGAGAAAGTCCCGTCGAAAAGTGTCAAGGGTGTTGTCACATATTGTCCTTGGGGT
GGAAGTGGGGGGAGTGTTTTTGATGATGGAATCTATGATGGTGTTAGGCAGATTTACTTG
TCACGCAATGTGGGAATCGTTTCGATAAGAGCTTGCTATGACAAAAATGGAGAACCAGTT
TGGGGAAACAAAAATGGTGGTACTGGTGGATTTAAAACTGAGAGGATAATATTTGATTAT
CCATCAGAGATTTTGACACACATCACAGGCTACTATGGACCAGCCATGATTATGGGTCCT
AACATTATTCAATCACTAACTTTTCATACCACAAAAGGCAAACATGGACCTTATGGAGAA
GAACAAGGGCAACAATTTTCAACCAAATTGAAAGAAGGGATTATTGTTGGATTTCATGGG
AGAAAAGGATTGTTTCTTGATGCACTTGGTGTTCATGTGTTGGAAGGAAAAGTTGTTCCA
TGTTTACCCCCTTCCCCGGCCCCCAACTCCATCAAACCAGGTGCAGCGTCTGTCCCATCT
TTACCTGCCCCAGCTCCCCCCAAATCCATCAAACCAGATGCAGCAACTGTCCCATCTTTA
CCTGCACCGGCTCCCCCCAAATCCGTCAAACCAAAAGCAGCATTTGTCACTGAGGTTGAT
GATAGACCACAGTGGTCTTTTAAACTGGGAAAGAAAGGACTCACTGAGGAGGGAGTGCAA
AGGATAGTGAAAGATCCAGCACCATATGGACCTGGTCCATGGGGTGGAGATGGTGGGAAG
CCATGGGATGATGGAGTTTTCACTGGGATCAAACAGATAATCCTAACACAATCATCAGAA
GGCATTTGCTGTATCGAAATTGAGTACGATCGAAATGGACAATCTGTTTGGTCAGTAAAA
CATGGTGCAAATGCTGGGAAATGCACAAATAGGGTAAAGTTAGAGTATCCTCATGAAGTA
CTAACTTGCATCACTGGATTCTATGGTCCTATAAGCAAAGATATGGGGTTGAAAGTGATA
AAATCACTGACTTTTCACACCACTAGAAGGAAGTTTGGTCCCTTTGGGGAGGAACTAGGA
ACATATTTCACTTCAGCAACAACAGAAGGTAAAGTGGTAGGATTTCATGGGAGGAGTGGA
ATGTATTTGGATGCAATTGGAGTGCATATGCAACACTGGTTAGGCAATCAGAAAACCTCC
AAGCATTCTCTTATGAAGATGTTCCATTGA

Peptide Sequence

PEP ID

XP_016442399.1
PEP Infomation

PREDICTED: jacalin-related lectin 3-like isoform X2 [Nicotiana tabacum]
Sequence

MSLENHGKQIISVGPWGGDNGLHWDDGVYSTIRQLEIAHGTGVDSLKVEYDKNGTSVWSE
KHGGSGGAKTDKVRLNYPDEFLTCLHGYYGSLHERGSVFVRSLTFQSNKRTYGPYGVQQG
TYFTLPISRGKVVGFHGKSGWYLDAIGVYVEPIHKSLPTNSLVQSQQHHSIVHSQQSVVQ
GFENYEYSMIQGSLGKNFDLIVAVRHKDENSNILPPTTLSRQTSGSDHDSGSTGPNKKVA
TIEKVPSKSVKGVVTYCPWGGSGGSVFDDGIYDGVRQIYLSRNVGIVSIRACYDKNGEPV
WGNKNGGTGGFKTERIIFDYPSEILTHITGYYGPAMIMGPNIIQSLTFHTTKGKHGPYGE
EQGQQFSTKLKEGIIVGFHGRKGLFLDALGVHVLEGKVVPCLPPSPAPNSIKPGAASVPS
LPAPAPPKSIKPDAATVPSLPAPAPPKSVKPKAAFVTEVDDRPQWSFKLGKKGLTEEGVQ
RIVKDPAPYGPGPWGGDGGKPWDDGVFTGIKQIILTQSSEGICCIEIEYDRNGQSVWSVK
HGANAGKCTNRVKLEYPHEVLTCITGFYGPISKDMGLKVIKSLTFHTTRRKFGPFGEELG
TYFTSATTEGKVVGFHGRSGMYLDAIGVHMQHWLGNQKTSKHSLMKMFH

Transcript Sequence

Gene sequence data has not been registered.